ASS1, CPTAC-170 - CPTAC Assay Portal | Office of Cancer Clinical Proteomics Research

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We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol	Other Aliases
ASS1	ASS

Sequence Length (AA)	Molecular Weight (Da)
412	46530

Protein Name
Argininosuccinate synthase

Sources
UniProt PhosphoSitePlus ® GeneCards	Human Protein Atlas

Protein Sequence hover to view complete sequence

10	20	30	40	50
MSSKGSVVLA	YSGGLDTSCI	LVWLKEQGYD	VIAYLANIGQ	KEDFEEARKK
60	70	80	90	100
ALKLGAKKVF	IEDVSREFVE	EFIWPAIQSS	ALYEDRYLLG	TSLARPCIAR
110	120	130	140	150
KQVEIAQREG	AKYVSHGATG	KGNDQVRFEL	SCYSLAPQIK	VIAPWRMPEF
160	170	180	190	200
YNRFKGRNDL	MEYAKQHGIP	IPVTPKNPWS	MDENLMHISY	EAGILENPKN
210	220	230	240	250
QAPPGLYTKT	QDPAKAPNTP	DILEIEFKKG	VPVKVTNVKD	GTTHQTSLEL
260	270	280	290	300
FMYLNEVAGK	HGVGRIDIVE	NRFIGMKSRG	IYETPAGTIL	YHAHLDIEAF
310	320	330	340	350
TMDREVRKIK	QGLGLKFAEL	VYTGFWHSPE	CEFVRHCIAK	SQERVEGKVQ
360	370	380	390	400
VSVLKGQVYI	LGRESPLSLY	NEELVSMNVQ	GDYEPTDATG	FININSLRLK
410	412
EYHRLQSKVT	AK

Data source: UniProt

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Assay Details for CPTAC-170 Collapse assay details

Data source: Panorama

Official Gene Symbol: ASS1
Peptide Sequence: APNTPDILEIEFK
Modification Type: unmodified
Protein - Site of Modification: N/A
Peptide - Site of Modification: N/A
Peptide Start: 216
Peptide End: 228

CPTAC ID: CPTAC-170
Peptide Molecular Mass: 1,485.7715
Species: Homo sapiens (Human)
Assay Type: Direct MRM
Matrix: cell line lysate pool
Submitting Laboratory: Fred Hutchinson Cancer Research Center
Submitting Lab PI: Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument: 5500 QTRAP (ABSCIEX)
Internal Standard: peptide
Peptide Standard Purity: >95%
Peptide Standard Label Type: 13C,15N

LC: nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing: ChromXP C18-CL, 3 um, 120A
Column Dimensions: 150 x 0.075 mm
Flow Rate: 500 nL / min

Chromatograms

Data source: Panorama

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Response Curves

Data source: Panorama

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Retrieving Data

Repeatability

Data source: Panorama

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	Average intra-assay CV (within day CV)			Average inter-assay CV (between day CV)			Total CV			n=
Fragment ion / Transition	Low	Med	High	Low	Med	High	Low	Med	High	Low	Med	High
y10 (1+)	20.7	14.2	9.8	25.7	27.5	23.4	33	30.9	25.4	15	25	15
y9 (1+)	14.6	11.2	7.5	33.2	26.7	25.6	36.3	29	26.7	15	25	15
y6 (1+)	51.7	12.1	17	64.9	24.6	28.3	83	27.4	33	15	25	15
sum	16.7	10.2	7.8	33.9	26.2	25.1	37.8	28.1	26.3	15	25	15

Additional Resources and Comments

Resources

Download SOPs

View Peptide in Panorama

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