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Overview Data source: UniProt

Official Gene Symbol Other Aliases
DUT N/A
Sequence Length (AA) Molecular Weight (Da)
252 26563
Protein Name
Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MTPLCPRPAL CYHFLTSLLR SAMQNARGAR QRAEAAVLSG PGPPLGRAAQ
60 70 80 90 100
HGIPRPLSSA GRLSQGCRGA STVGAAGWKG ELPKAGGSPA PGPETPAISP
110 120 130 140 150
SKRARPAEVG GMQLRFARLS EHATAPTRGS ARAAGYDLYS AYDYTIPPME
160 170 180 190 200
KAVVKTDIQI ALPSGCYGRV APRSGLAAKH FIDVGAGVID EDYRGNVGVV
210 220 230 240 250
LFNFGKEKFE VKKGDRIAQL ICERIFYPEI EEVQALDDTE RGSGGFGSTG
252
KN

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-65 Collapse assay details

Data source: Panorama

Official Gene Symbol
DUT
Peptide Sequence
GNVGVVLFNFGK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
195
Peptide End
206
CPTAC ID
CPTAC-65
Peptide Molecular Mass
1,249.6819
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (1+) 10.1 7.2 8.7 12.2 20.3 10.5 15.8 21.5 13.6 15 25 15
y7 (1+) 8.9 13.1 6.5 13.6 16.9 9 16.3 21.4 11.1 15 25 15
y6 (1+) 7.7 16.1 8.6 13.8 18.8 11.3 15.8 24.8 14.2 15 25 15
sum 5.6 8.5 7.1 11.9 14.6 9.5 13.2 16.9 11.9 15 25 15

Additional Resources and Comments


Assay Details for CPTAC-64 Collapse assay details

Data source: Panorama

Official Gene Symbol
DUT
Peptide Modified Sequence
TDIQIALPSGC[+57.0]YGR
Modification Type
Carbamidomethyl Cysteine
Protein - Site of Modification
166
Peptide - Site of Modification
11
Peptide Start
156
Peptide End
169
CPTAC ID
CPTAC-64
Peptide Molecular Mass
1,549.7559
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (1+) 49 11.6 11.4 54.6 13.5 15.7 73.4 17.8 19.4 15 25 15
y8 (1+) 46.7 15.1 8.6 53 13.4 10.4 70.6 20.2 13.5 15 25 15
y7 (1+) 31.1 8 5.2 34.3 8.3 9.6 46.3 11.5 10.9 15 25 15
sum 22.5 8.1 5.3 34.7 9.1 9 41.4 12.2 10.4 15 25 15

Additional Resources and Comments