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Overview Data source: UniProt

Official Gene Symbol Other Aliases
ATP5H N/A
Sequence Length (AA) Molecular Weight (Da)
161 18491
Protein Name
ATP synthase subunit d, mitochondrial
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MAGRKLALKT IDWVAFAEII PQNQKAIASS LKSWNETLTS RLAALPENPP
60 70 80 90 100
AIDWAYYKAN VAKAGLVDDF EKKFNALKVP VPEDKYTAQV DAEEKEDVKS
110 120 130 140 150
CAEWVSLSKA RIVEYEKEME KMKNLIPFDQ MTIEDLNEAF PETKLDKKKY
160 161
PYWPHQPIEN L

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-30 Collapse assay details

Data source: Panorama

Official Gene Symbol
ATP5H
Peptide Sequence
LAALPENPPAIDWAYYK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
42
Peptide End
58
CPTAC ID
CPTAC-30
Peptide Molecular Mass
1,930.9829
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y10 (1+) 13.5 9.1 4.9 24.5 13.3 12.2 28 16.1 13.1 15 25 15
y9 (1+) 24.5 8.8 6.9 32.1 11.6 10.3 40.4 14.6 12.4 15 25 15
y13 (2+) 14.3 9.8 5.8 26.2 12 12.5 29.8 15.5 13.8 15 25 15
sum 9.3 8.6 3.3 21.8 12.1 11 23.7 14.8 11.5 15 25 15

Additional Resources and Comments


Assay Details for CPTAC-29 Collapse assay details

Data source: Panorama

Official Gene Symbol
ATP5H
Peptide Sequence
SWNETLTSR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
33
Peptide End
41
CPTAC ID
CPTAC-29
Peptide Molecular Mass
1,092.5200
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y7 (1+) 10.7 7.3 3.8 12.4 8.4 6.5 16.4 11.1 7.5 15 25 15
y6 (1+) 27.3 8.2 8.7 26.9 9.4 27.1 38.3 12.5 28.5 15 25 15
y5 (1+) 22.6 7.1 7.3 24.8 6 7.7 33.6 9.3 10.6 15 25 15
sum 9.1 6.2 3.2 9.5 7.2 6.2 13.2 9.5 7 15 25 15

Additional Resources and Comments


Assay Details for non-CPTAC-3637 Collapse assay details

Data source: Panorama

Official Gene Symbol
Atp5h
Peptide Sequence
ANVAKPGLVDDFEK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
59
Peptide End
72
CPTAC ID
non-CPTAC-3637
Peptide Molecular Mass
1,501.7777
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y11 (2+) 3.5 4 1.7 11.8 4.9 3.3 12.3 6.3 3.7 15 15 15
y12 (2+) 7.3 3.6 3.2 13.3 4.4 3.3 15.2 5.7 4.6 15 15 15
y5 (1+) 13.4 2.5 4.1 17.7 4.7 6 22.2 5.3 7.3 15 15 15
y9 (1+) 9.2 4.2 3 16 6.5 6.1 18.5 7.7 6.8 15 15 15
y9 (2+) 15.6 5.4 4 17.2 6.2 7.2 23.2 8.2 8.2 15 15 15
sum 2.7 2.2 1 11.5 3.8 2.7 11.8 4.4 2.9 15 15 15

Additional Resources and Comments