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Overview Data source: UniProt

Official Gene Symbol Other Aliases
LCP1 PLS2
Sequence Length (AA) Molecular Weight (Da)
627 70288
Protein Name
Plastin-2
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MARGSVSDEE MMELREAFAK VDTDGNGYIS FNELNDLFKA ACLPLPGYRV
60 70 80 90 100
REITENLMAT GDLDQDGRIS FDEFIKIFHG LKSTDVAKTF RKAINKKEGI
110 120 130 140 150
CAIGGTSEQS SVGTQHSYSE EEKYAFVNWI NKALENDPDC RHVIPMNPNT
160 170 180 190 200
NDLFNAVGDG IVLCKMINLS VPDTIDERTI NKKKLTPFTI QENLNLALNS
210 220 230 240 250
ASAIGCHVVN IGAEDLKEGK PYLVLGLLWQ VIKIGLFADI ELSRNEALIA
260 270 280 290 300
LLREGESLED LMKLSPEELL LRWANYHLEN AGCNKIGNFS TDIKDSKAYY
310 320 330 340 350
HLLEQVAPKG DEEGVPAVVI DMSGLREKDD IQRAECMLQQ AERLGCRQFV
360 370 380 390 400
TATDVVRGNP KLNLAFIANL FNRYPALHKP ENQDIDWGAL EGETREERTF
410 420 430 440 450
RNWMNSLGVN PRVNHLYSDL SDALVIFQLY EKIKVPVDWN RVNKPPYPKL
460 470 480 490 500
GGNMKKLENC NYAVELGKNQ AKFSLVGIGG QDLNEGNRTL TLALIWQLMR
510 520 530 540 550
RYTLNILEEI GGGQKVNDDI IVNWVNETLR EAKKSSSISS FKDPKISTSL
560 570 580 590 600
PVLDLIDAIQ PGSINYDLLK TENLNDDEKL NNAKYAISMA RKIGARVYAL
610 620 627
PEDLVEVNPK MVMTVFACLM GKGMKRV

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-88 Collapse assay details

Data source: Panorama

Official Gene Symbol
LCP1
Peptide Sequence
AYYHLLEQVAPK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
298
Peptide End
309
CPTAC ID
CPTAC-88
Peptide Molecular Mass
1,430.7558
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (1+) 18.1 26.2 27.6 23.5 27.8 34.9 29.7 38.2 44.5 15 15 15
y10 (2+) 7.4 5.2 5 12 9.8 11.9 14.1 11.1 12.9 15 15 15
y9 (2+) 28.3 21.1 28.2 24.7 34.9 31 37.6 40.8 41.9 15 15 15
sum 7.1 6.9 5.2 12.2 8.6 13.5 14.1 11 14.5 15 15 15

Additional Resources and Comments


Assay Details for CPTAC-89 Collapse assay details

Data source: Panorama

Official Gene Symbol
LCP1
Peptide Sequence
FSLVGIGGQDLNEGNR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
473
Peptide End
488
CPTAC ID
CPTAC-89
Peptide Molecular Mass
1,674.8325
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y12 (1+) 17.1 5.6 5.7 18.5 6.6 6.8 25.2 8.7 8.9 15 25 15
y10 (1+) 15.7 6.6 7.7 16.4 7.1 9.5 22.7 9.7 12.2 15 25 15
y9 (1+) 18.7 11.7 12.5 20.3 13.7 31.5 27.6 18 33.9 15 25 15
sum 14.4 5.7 6.4 14.9 6.6 7.4 20.7 8.7 9.8 15 25 15

Additional Resources and Comments


Assay Details for non-CPTAC-3733 Collapse assay details

Data source: Panorama

Official Gene Symbol
Lcp1
Peptide Sequence
VNHLYSDLSDALVIFQLYEK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
413
Peptide End
432
CPTAC ID
non-CPTAC-3733
Peptide Molecular Mass
2,366.2158
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b14 (2+) 13.7 7.5 3.1 13.5 6.4 7.3 19.2 9.9 7.9 15 15 15
y3 (1+) 10.8 2.6 2.9 9.2 4.7 11.8 14.2 5.4 12.2 15 15 15
y6 (1+) 8.2 5.7 5.2 11.4 7.3 8 14 9.3 9.5 15 15 15
y7 (1+) 20.6 5.9 4.6 27 9.4 6.5 34 11.1 8 15 15 15
b17 (2+) 9.1 3.3 3.2 10.3 7.1 9.5 13.7 7.8 10 15 15 15
sum 5.4 1.3 2 7.3 3.8 8.2 9.1 4 8.4 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-3599 Collapse assay details

Data source: Panorama

Official Gene Symbol
Lcp1
Peptide Sequence
VYALPEDLVEVNPK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
597
Peptide End
610
CPTAC ID
non-CPTAC-3599
Peptide Molecular Mass
1,584.8399
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters Test button response curves

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y2 (1+) 16.4 3.4 2.8 31 5.2 6.4 35.1 6.2 7 15 15 15
y10 (1+) 6.5 3.4 3.2 8.6 7.6 6.7 10.8 8.3 7.4 15 15 15
b4 (1+) 6.2 3.9 2 6.7 6.4 4.9 9.1 7.5 5.3 15 15 15
b3 (1+) 3.1 1.7 3.1 5 7.4 4.1 5.9 7.6 5.1 15 15 15
b2 (1+) 5.5 3.9 2.5 6.6 6.6 5.5 8.6 7.7 6 15 15 15
sum 3 1.2 1.3 5.2 6.4 4.6 6 6.5 4.8 15 15 15

Additional Resources and Comments