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Overview Data source: UniProt

Official Gene Symbol Other Aliases
APOC1 N/A
Sequence Length (AA) Molecular Weight (Da)
83 9332
Protein Name
Apolipoprotein C-I
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MRLFLSLPVL VVVLSIVLEG PAPAQGTPDV SSALDKLKEF GNTLEDKARE
60 70 80 83
LISRIKQSEL SAKMREWFSE TFQKVKEKLK IDS

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-2623 Collapse assay details

Data source: Panorama

Official Gene Symbol
APOC1
Peptide Sequence
EWFSETFQK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
66
Peptide End
74
CPTAC ID
non-CPTAC-2623
Peptide Molecular Mass
1,200.5451
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y7 (1+) 12.2 5.1 7.9 15.8 6.4 8.3 20 8.2 11.5 15 15 15
y6 (1+) 12.1 6.8 6.6 16.6 8 6.8 20.5 10.5 9.5 15 15 15
y7 (2+) 25.2 6.1 8.5 30.2 8.5 8.2 39.3 10.5 11.8 15 15 15
y4 (1+) 20.9 8.6 4.2 31.1 10.9 4.3 37.5 13.9 6 15 15 15
y5 (1+) 18.1 10 6 17.8 9.9 8 25.4 14.1 10 15 15 15
sum 6.7 3.4 4.6 14.7 6.1 4.6 16.2 7 6.5 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-1085 Collapse assay details

Data source: Panorama

Official Gene Symbol
APOC1
Peptide Sequence
TPDVSSALDK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
27
Peptide End
36
CPTAC ID
non-CPTAC-1085
Peptide Molecular Mass
1,031.5135
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (2+) 10.1 6.9 8 11.8 6.3 7.6 15.5 9.3 11 15 15 15
y3 (1+) 22.4 9.1 5.2 20 9.6 4.6 30 13.2 6.9 15 15 15
y6 (1+) 16.7 10 8.1 17.4 10.7 9.5 24.1 14.6 12.5 15 15 15
y7 (1+) 19.6 9.3 6.5 19.5 9.1 6.8 27.6 13 9.4 15 15 15
y8 (1+) 13.3 9.4 6.3 12.1 8.4 8.4 18 12.6 10.5 15 15 15
sum 8.7 4 4.9 9.2 4.6 5.2 12.7 6.1 7.1 15 15 15

Additional Resources and Comments