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Overview Data source: UniProt

Official Gene Symbol Other Aliases
APOC2 APC2
Sequence Length (AA) Molecular Weight (Da)
101 11284
Protein Name
Apolipoprotein C-II
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MGTRLLPALF LVLLVLGFEV QGTQQPQQDE MPSPTFLTQV KESLSSYWES
60 70 80 90 100
AKTAAQNLYE KTYLPAVDEK LRDLYSKSTA AMSTYTGIFT DQVLSVLKGE
101
E

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-2625 Collapse assay details

Data source: Panorama

Official Gene Symbol
APOC2
Peptide Sequence
ESLSSYWESAK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
42
Peptide End
52
CPTAC ID
non-CPTAC-2625
Peptide Molecular Mass
1,285.5826
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y8 (1+) 8.6 3.8 8.6 13.6 6.8 7.6 16.1 7.8 11.5 15 15 15
y3 (1+) 12.9 4 5.5 14.5 5 5.5 19.4 6.4 7.8 15 15 15
b2 (1+) 17.4 11.7 8.8 18.6 12.1 8.5 25.5 16.8 12.2 15 15 15
y7 (1+) 12.1 6.5 6.8 18.7 7.3 7.2 22.3 9.8 9.9 15 15 15
sum 6.3 3.7 5.2 11.7 5.7 4.5 13.3 6.8 6.9 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-1084 Collapse assay details

Data source: Panorama

Official Gene Symbol
APOC2
Peptide Sequence
TYLPAVDEK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
62
Peptide End
70
CPTAC ID
non-CPTAC-1084
Peptide Molecular Mass
1,034.5284
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b3 (1+) 11.6 5.7 3.5 11.6 7.9 8.7 16.4 9.7 9.4 13 10 13
b2 (1+) 6.9 4.5 5 8.3 4.7 5.4 10.8 6.5 7.4 15 15 15
y6 (1+) 5.8 5.8 5.7 6.9 6.6 7 9 8.8 9 15 15 15
y7 (1+) 7.1 4.2 4 8.1 5.8 4.5 10.8 7.2 6 15 15 15
sum 3.7 3.7 2.4 4.9 5.3 3.2 6.1 6.5 4 15 15 15

Additional Resources and Comments