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Overview Data source: UniProt

Official Gene Symbol Other Aliases
Cnmd Chmi, Lect1
Sequence Length (AA) Molecular Weight (Da)
334 37225
Protein Name
Leukocyte cell-derived chemotaxin 1
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MTENSDKVPI TMVGPEDVEF CSPPAYTTVT VKPSGSPTRL LKVGAVVLIS
60 70 80 90 100
GAVLLLFGAI GAFYFWKGND NHIYNVHYSM SINGKLQDGS MEIDAVNNLE
110 120 130 140 150
TFKMGSGAEE AIEVNDFKNG ITGIRFAGGE KCYIKAQVKA RIPEVGTVTK
160 170 180 190 200
QSISELEGKI MPANYEENSL IWVAVDQPVK DSSFLSSKIL ELCGDLPIFW
210 220 230 240 250
LKPMYPKEIQ RERREVVRNS APSTTRRPHS EPRGNAGPGR LSNGTRPNVQ
260 270 280 290 300
DDAEPFNPDN PYHQQEGESM TFDPRLDHEG ICCIECRRSY THCQKICEPL
310 320 330 334
GGYYPWPYNY QGCRSACRVV MPCSWWVARI LGMV

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3402 Collapse assay details

Data source: Panorama

Official Gene Symbol
Cnmd
Peptide Sequence
NGITGIR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
119
Peptide End
125
CPTAC ID
non-CPTAC-3402
Peptide Molecular Mass
729.4133
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (2+) 20.2 8.5 14.8 27.6 14.4 20 34.2 16.7 24.9 15 15 15
y3 (1+) 7.6 7 4.4 16.2 9.3 6 17.9 11.6 7.4 15 15 15
y4 (1+) 4.6 6.6 4.7 13.4 11.5 6.2 14.2 13.3 7.8 15 15 15
y5 (1+) 6.4 7.4 5.5 15.1 12 6.7 16.4 14.1 8.7 15 15 15
y6 (1+) 8.7 7.3 6.7 19 11.1 6.4 20.9 13.3 9.3 15 15 15
sum 2.5 3.8 3.3 14 10.9 4.7 14.2 11.5 5.7 15 15 15

Additional Resources and Comments