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We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Podn

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Available Assays

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Podn N/A
Sequence Length (AA) Molecular Weight (Da)
611 68718
Protein Name
Podocan
Sources
UniProt
PhosphoSitePlus ®
GeneCards 		Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MAGSRGLPLL LLVLQLFLGP VLPVRAPVFG RSDTPTLSPE ENEFVEEENQ
60 70 80 90 100
PVLVLSSEEP EPGPATVDCP RDCACSQEGV VDCGGIDLRE FPGDLPEHTN
110 120 130 140 150
HLSLQNNQLE KIYPEELSRL QRLETLNLQN NRLTSRGLPE EAFEHLTSLN
160 170 180 190 200
YLYLANNKLT LAPRFLPNAL ISVDFAANYL TKIYGLTFGQ KPNLRSVYLH
210 220 230 240 250
NNKLADAGLP DHMFNGSSNV EILILSSNFL RHVPKHLPPA LYKLHLKNNK
260 270 280 290 300
LEKIPPGAFS ELSNLRELYL QNNYLTDEGL DNETFWKLSS LEYLDLSSNN
310 320 330 340 350
LSRVPAGLPR SLVLLHLEKN AIQSVEADVL TPIRNLEYLL LHSNQLQAKG
360 370 380 390 400
IHPLAFQGLK KLHTVHLYNN ALERVPSGLP RRVRTLMILH NQITGIGRED
410 420 430 440 450
FATTYFLEEL NLSYNRITSP QMHRDAFRKL RLLRSLDLSG NRLQTLPPGL
460 470 480 490 500
PKNVHVLKVK RNELAALARG ALAGMAQLRE LYLTGNRLRS RALGPRAWVD
510 520 530 540 550
LAGLQLLDIA GNQLTEVPEG LPPSLEYLYL QNNKISAVPA NAFDSTPNLK
560 570 580 590 600
GIFLRFNKLA VGSVVESAFR RLKHLQVLDI EGNFEFGNGS KDKDEEEEEE
610 611
EEEEDEEEET R

Data source: UniProt

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3608 Collapse assay details

Data source: Panorama

Official Gene Symbol
Podn
Peptide Sequence
ELYLTGNR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
480
Peptide End
487
CPTAC ID
non-CPTAC-3608
Peptide Molecular Mass
964.4978
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama

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Response Curves

Data source: Panorama

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Retrieving Data

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Repeatability

Data source: Panorama

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  Average intra-assay CV
(within day CV)		 Average inter-assay CV
(between day CV)		 Total CV
equation		 n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b2 (1+) 45.1 8.5 6.9 47.8 11.7 15.3 65.7 14.5 16.8 15 15 15
y3 (1+) 16.3 5.9 5.5 19.9 8.5 5.1 25.7 10.3 7.5 15 15 15
y4 (1+) 11.6 3.4 6 16.3 8.4 6.9 20 9.1 9.1 15 15 15
y5 (1+) 13.3 4.9 2.8 14.5 6.9 3.7 19.7 8.5 4.6 15 15 15
y6 (1+) 22.1 6.4 5.6 26.7 9.8 8.1 34.7 11.7 9.8 15 15 15
sum 10 2.7 1.8 10.8 7.2 4.8 14.7 7.7 5.1 15 15 15

Additional Resources and Comments

Resources
Download SOPs
View Peptide in Panorama
View Protein in Panorama
Comments