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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Txndc17 Txnl5
Sequence Length (AA) Molecular Weight (Da)
123 14015
Protein Name
Thioredoxin domain-containing protein 17
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MATFEEVSVL GFEEFDKAVK EHEGKTIFAY FSGSKDTEGK SWCPDCVEAE
60 70 80 90 100
PVIREGLKHV TEDCVFIYCQ VGDKPYWKDP NNDFRQKLKI TAVPTLLKYG
110 120 123
TPQKLVESEC CQSSLVEMIF SED

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3677 Collapse assay details

Data source: Panorama

Official Gene Symbol
Txndc17
Peptide Sequence
TIFAYFSGSK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
26
Peptide End
35
CPTAC ID
non-CPTAC-3677
Peptide Molecular Mass
1,119.5601
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y7 (1+) 31.6 9.7 4.5 42.1 8.4 7.4 52.6 12.8 8.7 15 15 15
y8 (1+) 11.4 4.9 3.5 11.7 7.7 5.2 16.3 9.1 6.3 15 15 15
b2 (1+) 10.8 3.1 1.8 13 2.6 5.2 16.9 4 5.5 15 15 15
y8 (2+) 26.1 6.5 4.7 26 7.8 7.6 36.8 10.2 8.9 15 15 15
y4 (1+) 34.8 11.5 3.4 33.9 11.1 5 48.6 16 6 15 15 15
sum 7.3 2.2 1.7 7.7 3.5 4.9 10.6 4.1 5.2 15 15 15


Additional Resources and Comments