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We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Apoc4 Acl
Sequence Length (AA) Molecular Weight (Da)
124 14288
Protein Name
Apolipoprotein C-IV
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MSLLRCRPRD LPSVSLSVLF LVSFVASMST ESLSPTPGPE SSRWSLVRAR
60 70 80 90 100
VLEMVEPLVT RTRDRWQWFW GPGAVQGFMQ TYYEDHLKDL GPRTQAWLQS
110 120 124
SRDHLLNKTH SLCPRLLCKD RTQG

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-2626 Collapse assay details

Data source: Panorama

Official Gene Symbol
APOC4
Peptide Sequence
ELLETVVNR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
56
Peptide End
64
CPTAC ID
non-CPTAC-2626
Peptide Molecular Mass
1,071.5924
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (1+) 17.6 5.8 7.3 18.3 8.6 9.3 25.4 10.4 11.8 15 15 15
y4 (1+) 8.6 7.5 7 11.9 8.2 8.8 14.7 11.1 11.2 15 15 15
y7 (2+) 24.3 10.8 9.4 25.1 15.6 11.5 34.9 19 14.9 15 15 15
y6 (1+) 12.7 7.6 9.3 15.6 8.8 8.3 20.1 11.6 12.5 15 15 15
y3 (1+) 17.2 5.1 10.2 15.4 9 12 23.1 10.3 15.7 15 15 15
sum 10 4.6 7.2 12.7 7.1 8.3 16.2 8.5 11 15 15 15


Additional Resources and Comments


Assay Details for non-CPTAC-3419 Collapse assay details

Data source: Panorama

Official Gene Symbol
Apoc4
Peptide Sequence
TQAWLQSSR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
94
Peptide End
102
CPTAC ID
non-CPTAC-3419
Peptide Molecular Mass
1,075.5411
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y4 (1+) 7.9 5.7 4.4 11.1 7.5 5.1 13.6 9.4 6.7 15 15 15
y5 (1+) 5.2 3.2 7.4 12.6 6 8.7 13.6 6.8 11.4 15 15 15
y6 (1+) 5.5 4.8 5.5 12.1 7.6 5.7 13.3 9 7.9 15 15 15
y7 (1+) 2.2 4.4 3.6 15 6.2 7.1 15.2 7.6 8 15 15 15
sum 2.1 2.8 1.7 13.1 5.7 4.7 13.3 6.4 5 15 15 15


Additional Resources and Comments