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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Apoa5 Rap3
Sequence Length (AA) Molecular Weight (Da)
368 41262
Protein Name
Apolipoprotein A-V
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MAAVITWALA LLAVFASTQA RKSLWDYFSQ NSWSKGVMGQ PQKLAQENLK
60 70 80 90 100
GSFEQDLYNM NNYLEKLGPL RGPGKEPPLL AQDPEGIRKQ LQQELGEVSS
110 120 130 140 150
RLEPYMAAKH QQVGWNLEGL RQQLKPYTAE LMEQVGLSVQ ELQEQLRVVG
160 170 180 190 200
EDTKAQLLGG VDEALNLLQD MQSRVLHHTD RVKELFHPYA ERLVTGIGHH
210 220 230 240 250
VQELHRSVAP HAAASPARLS RCVQTLSHKL TRKAKDLHTS IQRNLDQLRD
260 270 280 290 300
ELSAFIRVST DGAEDGDSLD PQALSEEVRQ RLQAFRHDTY LQIAAFTQAI
310 320 330 340 350
DQETEEIQHQ LAPPPPSHSA FAPELGHSDS NKALSRLQSR LDDLWEDIAY
360 368
GLQDQGHSHL SDPEGHSG

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3559 Collapse assay details

Data source: Panorama

Official Gene Symbol
Apoa5
Peptide Sequence
LVTGIGHHVQELHR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
193
Peptide End
206
CPTAC ID
non-CPTAC-3559
Peptide Molecular Mass
1,594.8692
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b2 (1+) 9.2 5.2 4.9 12.6 5.5 6 15.6 7.6 7.7 15 15 15
y11 (3+) 8.5 7.4 8.5 7.6 11 10.8 11.4 13.3 13.7 15 15 15
y13 (3+) 12.8 6.1 9.2 15.1 7.9 8.5 19.8 10 12.5 15 15 15
y9 (2+) 13.9 4.9 5.9 13.4 8.4 7.4 19.3 9.7 9.5 15 15 15
y11 (2+) 12.7 5.9 5.4 15.9 10.2 5.1 20.3 11.8 7.4 15 15 15
sum 4.4 2.6 3.1 4.7 5.9 4.4 6.4 6.4 5.4 15 15 15


Additional Resources and Comments