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Overview Data source: UniProt

Official Gene Symbol Other Aliases
Vta1 N/A
Sequence Length (AA) Molecular Weight (Da)
309 33913
Protein Name
Vacuolar protein sorting-associated protein VTA1 homolog
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MAALAPLPPL PAQFKSIQHH LRTAQEHDKR DPVVAYYCRL YAMQTGMKID
60 70 80 90 100
SKTPECRKFL SKLMDQLEAL KKQLGDNEAV TQEIVGCAHL ENYALKMFLY
110 120 130 140 150
ADNEDRAGRF HKNMIKSFYT ASLLIDVITV FGELTDENVK HRKYARWKAT
160 170 180 190 200
YIHNCLKNGE TPQAGPVGIE EENDVEENED VGATSLPTQP PQPSSSSAYD
210 220 230 240 250
PSNLAPGSYS GIQIPPGAHA PANTPAEVPH STGVTSNAVQ PSPQTVPAAP
260 270 280 290 300
AVDPDLYTAS QGDIRLTPED FARAQKYCKY AGSALQYEDV GTAVQNLQKA
309
LRLLTTGRE

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3754 Collapse assay details

Data source: Panorama

Official Gene Symbol
Vta1
Peptide Sequence
LTPEDFAR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
266
Peptide End
273
CPTAC ID
non-CPTAC-3754
Peptide Molecular Mass
947.4712
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b2 (1+) 20 18.2 7 25.5 22.2 11.2 32.4 28.7 13.2 15 15 15
y6 (2+) 20.6 12.4 9.8 27.3 12.3 11.2 34.2 17.5 14.9 15 15 15
y4 (1+) 25.5 15.6 8.8 28.3 15.8 8.4 38.1 22.2 12.2 15 15 15
y5 (1+) 24 14.5 14.5 30.4 17.3 14.7 38.7 22.6 20.6 15 15 15
y6 (1+) 10.4 7.2 6.2 15.8 13 12.7 18.9 14.9 14.1 15 15 15
sum 5.9 5.4 4.6 15.1 10.1 8.8 16.2 11.5 9.9 15 15 15

Additional Resources and Comments