Dhrs11, CPTAC-3438 - CPTAC Assay Portal | Office of Cancer Clinical Proteomics Research

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Overview Data source: UniProt

Official Gene Symbol	Other Aliases
Dhrs11	Sdr24c1

Sequence Length (AA)	Molecular Weight (Da)
260	28274

Protein Name
Dehydrogenase/reductase SDR family member 11

Sources
UniProt PhosphoSitePlus ® GeneCards	Human Protein Atlas

Protein Sequence hover to view complete sequence

10	20	30	40	50
MTRAGMERWR	DRLALVTGAS	GGIGAAVARA	LVQQGLKVVG	CARTVGNIEE
60	70	80	90	100
LAAECKSAGY	PGTLIPYRCD	LSNEEDILSM	FSAVRSQHSG	VDICINNAGM
110	120	130	140	150
ARPDTLLSGS	TSGWKDMFNV	NVLALSICTR	EAYQSMKERN	IDDGHIININ
160	170	180	190	200
SMCGHRVPPQ	SVIHFYSATK	YAVTALTEGL	RQELLEAQTH	IRATCISPGL
210	220	230	240	250
VETQFAFKLH	DKDPGEAAAT	YEHIKCLRPE	DVAEAVIYVL	STPPHVQVGD
260
IQMRPTEQVT

Data source: UniProt

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Assay Details for non-CPTAC-3438 Collapse assay details

Data source: Panorama

Official Gene Symbol: Dhrs11
Peptide Sequence: LHDKDPGEAAATYEHIK
Modification Type: unmodified
Protein - Site of Modification: N/A
Peptide - Site of Modification: N/A
Peptide Start: 209
Peptide End: 225

CPTAC ID: non-CPTAC-3438
Peptide Molecular Mass: 1,893.9221
Species: Mus musculus (Mouse)
Assay Type: Direct MRM
Matrix: Plasma
Submitting Laboratory: UVic-Genome BC Proteomics Centre
Submitting Lab PI: Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument: Agilent 6490/6495 QQQ
Internal Standard: synthetic peptide
Peptide Standard Purity: >95%
Peptide Standard Label Type: 13C and 15N at C-terminus K

LC: 1290 LC (Agilent)
Column Packing: Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions: 2.1 x 150 mm
Flow Rate: 400 µL/min

Chromatograms

Data source: Panorama

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Response Curves

Data source: Panorama

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Retrieving Data

Repeatability

Data source: Panorama

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	Average intra-assay CV (within day CV)			Average inter-assay CV (between day CV)			Total CV			n=
Fragment ion / Transition	Low	Med	High	Low	Med	High	Low	Med	High	Low	Med	High
b11 (2+)	18.7	7.3	5.9	24.2	16.8	10.7	30.6	18.3	12.2	15	15	15
b10 (2+)	6.7	6.6	7.7	14	9.3	3.8	15.5	11.4	8.6	15	15	15
b2 (1+)	5.6	4.6	5.7	11.9	9.1	7.6	13.2	10.2	9.5	15	15	15
y16 (4+)	9.8	8.2	9.5	19.7	11.3	10.5	22	14	14.2	15	15	15
y15 (3+)	7.9	9.3	8.7	11.9	10.3	10.4	14.3	13.9	13.6	15	15	15
sum	3.6	3.4	3.4	12	8.3	3.7	12.5	9	5	15	15	15

Additional Resources and Comments

Resources

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View Peptide in Panorama

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Comments

Assay Details for non-CPTAC-3784 Collapse assay details

Data source: Panorama

Official Gene Symbol: Dhrs11
Peptide Sequence: SAGYPGTLIPYR
Modification Type: unmodified
Protein - Site of Modification: N/A
Peptide - Site of Modification: N/A
Peptide Start: 57
Peptide End: 68

CPTAC ID: non-CPTAC-3784
Peptide Molecular Mass: 1,293.6717
Species: Mus musculus (Mouse)
Assay Type: Direct MRM
Matrix: Plasma
Submitting Laboratory: UVic-Genome BC Proteomics Centre
Submitting Lab PI: Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.