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Overview Data source: UniProt

Official Gene Symbol Other Aliases
Timp1 Timp, Timp-1
Sequence Length (AA) Molecular Weight (Da)
205 22628
Protein Name
Metalloproteinase inhibitor 1
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MMAPFASLAS GILLLLSLIA SSKACSCAPP HPQTAFCNSD LVIRAKFMGS
60 70 80 90 100
PEINETTLYQ RYKIKMTKML KGFKAVGNAA DIRYAYTPVM ESLCGYAHKS
110 120 130 140 150
QNRSEEFLIT GRLRNGNLHI SACSFLVPWR TLSPAQQRAF SKTYSAGCGV
160 170 180 190 200
CTVFPCLSIP CKLESDTHCL WTDQVLVGSE DYQSRHFACL PRNPGLCTWR
205
SLGAR

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-680 Collapse assay details

Data source: Panorama

Official Gene Symbol
TIMP1
Peptide Modified Sequence
FVGTPEVN[+1.0]QTTLYQR
Modification Type
Deamidated (NQ)
Protein - Site of Modification
53
Peptide - Site of Modification
8
Peptide Start
46
Peptide End
60
CPTAC ID
CPTAC-680
Peptide Molecular Mass
1,752.8683
Species
Homo sapiens (Human)
Assay Type
Enrichment MRM
Enrichment Method
N/A
Matrix
serum
Submitting Laboratory
Johns Hopkins University
Submitting Lab PI
Daniel Chan, Hui Zhang, Zhen Zhang

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Q-Exactive (ThermoFisher)
Internal Standard
synthetic peptide
Peptide Standard Purity
Crude
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
Dionex UltiMate 3000 RSLCnano LC (ThermoFisher)
Column Packing
Acclaim PepMap100 C18, 5um (Trap); Acclaim PepMap RSLC C18, 2um (Analytical)
Column Dimensions
300um x 5mm (Trap); 75um x 25cm (Analytical)
Flow Rate
0.5 uL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y11 (1+) 7.7 6.6 9.1 8.2 9.5 9.6 11.2 11.6 13.2 15 15 15
y9 (1+) 13.1 12.8 8.4 14 11.6 11.6 19.2 17.3 14.3 15 15 15
y8 (1+) 7.9 13.1 9.5 7.7 12.5 10.3 11 18.1 14 15 15 15
sum 6.1 6.8 7.1 6.8 7.7 7.3 9.1 10.3 10.2 15 15 15


Additional Resources and Comments


Assay Details for non-CPTAC-3503 Collapse assay details

Data source: Panorama

Official Gene Symbol
Timp1
Peptide Sequence
AVGNAADIR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
75
Peptide End
83
CPTAC ID
non-CPTAC-3503
Peptide Molecular Mass
885.4668
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y2 (1+) 10.9 9.1 4.3 12.8 8.2 6.9 16.8 12.2 8.1 15 15 15
y3 (1+) 20.5 9.3 8.7 22.5 12.9 10.9 30.4 15.9 13.9 15 15 15
y4 (1+) 8.8 6.7 6.6 11.8 9 7.2 14.7 11.2 9.8 15 15 15
y5 (1+) 12.9 9.6 8.6 11.7 8.6 9.7 17.4 12.9 13 15 15 15
y7 (1+) 6.1 6.5 5.5 7.7 8.4 5 9.8 10.6 7.4 15 15 15
sum 4.6 4.6 3.7 5.7 6.5 3.4 7.3 8 5 15 15 15


Additional Resources and Comments