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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Atox1 N/A
Sequence Length (AA) Molecular Weight (Da)
68 7338
Protein Name
Copper transport protein ATOX1
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MPKHEFSVDM TCEGCAEAVS RVLNKLGGVE FNIDLPNKKV CIDSEHSSDT
60 68
LLATLNKTGK AVSYLGPK

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3768 Collapse assay details

Data source: Panorama

Official Gene Symbol
Atox1
Peptide Sequence
AVSYLGPK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
61
Peptide End
68
CPTAC ID
non-CPTAC-3768
Peptide Molecular Mass
833.4647
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>80%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y7 (2+) 32.4 19.4 25.1 35.5 17.4 41.2 48.1 26.1 48.2 15 15 15
y2 (1+) 20 11.5 9.6 19.7 13.6 10.1 28.1 17.8 13.9 15 15 15
y3 (1+) 12.3 7.3 5.1 16.1 11.1 5.7 20.3 13.3 7.6 15 15 15
y5 (1+) 24.7 7.7 9.7 42.4 15.2 8.9 49.1 17 13.2 15 15 15
y6 (1+) 6.9 6.4 6.5 11.5 7.2 9.8 13.4 9.6 11.8 15 15 15
sum 5.8 3.7 5.1 10.1 7.1 8.1 11.6 8 9.6 15 15 15


Additional Resources and Comments