Arhgdib, CPTAC-3815 - CPTAC Assay Portal | Office of Cancer Clinical Proteomics Research

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Overview Data source: UniProt

Official Gene Symbol	Other Aliases
Arhgdib	Gdid4

Sequence Length (AA)	Molecular Weight (Da)
200	22851

Protein Name
Rho GDP-dissociation inhibitor 2

Sources
UniProt PhosphoSitePlus ® GeneCards	Human Protein Atlas

Protein Sequence hover to view complete sequence

10	20	30	40	50
MTEKDAQPQL	EEADDDLDSK	LNYKPPPQKS	LKELQEMDKD	DESLTKYKKT
60	70	80	90	100
LLGDVPVVAD	PTVPNVTVTR	LSLVCDSAPG	PITMDLTGDL	EALKKDTFVL
110	120	130	140	150
KEGIEYRVKI	NFKVNKDIVS	GLKYVQHTYR	TGMRVDKATF	MVGSYGPRPE
160	170	180	190	200
EYEFLTPVEE	APKGMLARGT	YHNKSFFTDD	DKQDHLTWEW	NLAIKKDWTE

Data source: UniProt

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Assay Details for non-CPTAC-3815 Collapse assay details

Data source: Panorama

Official Gene Symbol: Arhgdib
Peptide Sequence: YVQHTYR
Modification Type: unmodified
Protein - Site of Modification: N/A
Peptide - Site of Modification: N/A
Peptide Start: 124
Peptide End: 130

CPTAC ID: non-CPTAC-3815
Peptide Molecular Mass: 965.4719
Species: Mus musculus (Mouse)
Assay Type: Direct MRM
Matrix: Plasma
Submitting Laboratory: UVic-Genome BC Proteomics Centre
Submitting Lab PI: Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument: Agilent 6490/6495 QQQ
Internal Standard: synthetic peptide
Peptide Standard Purity: >80%
Peptide Standard Label Type: 13C and 15N at C-terminus R

LC: 1290 LC (Agilent)
Column Packing: Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions: 2.1 x 150 mm
Flow Rate: 400 µL/min

Chromatograms

Data source: Panorama

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Response Curves

Data source: Panorama

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Retrieving Data

Repeatability

Data source: Panorama

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	Average intra-assay CV (within day CV)			Average inter-assay CV (between day CV)			Total CV			n=
Fragment ion / Transition	Low	Med	High	Low	Med	High	Low	Med	High	Low	Med	High
y5 (2+)	10.4	8.2	9.6	12.1	10.9	12.8	16	13.6	16	15	15	15
y6 (2+)	8.6	8.9	7.8	8.7	10	11	12.2	13.4	13.5	15	15	15
y2 (1+)	14.8	11.3	12	13.4	18	14	20	21.3	18.4	15	15	15
y3 (1+)	9	5.2	10.5	8.2	11.2	9.7	12.2	12.3	14.3	15	15	15
y4 (1+)	6.8	8.8	8.5	9	10	8.8	11.3	13.3	12.2	15	15	15
sum	3.5	4.4	4.2	5.2	6.6	7.9	6.3	7.9	8.9	15	15	15

Arhgdib

Overview Data source: UniProt

Protein Sequence hover to view complete sequence

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Assay Details for non-CPTAC-3815 Collapse assay details

Assay Parameters Collapse assay parameters

Chromatograms

Response Curves

Repeatability

Additional Resources and Comments

Comments

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Arhgdib

Overview Data source: UniProt

Protein Sequence hover to view complete sequence

Protein Map Collapse protein map

Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Assay Details for non-CPTAC-3815 Collapse assay details

Assay Parameters Collapse assay parameters

Chromatograms

Response Curves

Repeatability

Additional Resources and Comments

Comments