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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Rnh1 Rnh
Sequence Length (AA) Molecular Weight (Da)
456 49816
Protein Name
Ribonuclease inhibitor
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MSLDIQCEQL SDARWTELLP LIQQYEVVRL DDCGLTEVRC KDISSAVQAN
60 70 80 90 100
PALTELSLRT NELGDGGVGL VLQGLQNPTC KIQKLSLQNC GLTEAGCGIL
110 120 130 140 150
PGMLRSLSTL RELHLNDNPM GDAGLKLLCE GLQDPQCRLE KLQLEYCNLT
160 170 180 190 200
ATSCEPLASV LRVKADFKEL VLSNNDLHEP GVRILCQGLK DSACQLESLK
210 220 230 240 250
LENCGITAAN CKDLCDVVAS KASLQELDLS SNKLGNAGIA ALCPGLLLPS
260 270 280 290 300
CKLRTLWLWE CDITAEGCKD LCRVLRAKQS LKELSLASNE LKDEGARLLC
310 320 330 340 350
ESLLEPGCQL ESLWIKTCSL TAASCPYFCS VLTKSRSLLE LQMSSNPLGD
360 370 380 390 400
EGVQELCKAL SQPDTVLREL WLGDCDVTNS GCSSLANVLL ANRSLRELDL
410 420 430 440 450
SNNCMGGPGV LQLLESLKQP SCTLQQLVLY DIYWTNEVEE QLRALEEERP
456
SLRIIS

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3997 Collapse assay details

Data source: Panorama

Official Gene Symbol
Rnh1
Peptide Sequence
ALSQPDTVLR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
359
Peptide End
368
CPTAC ID
non-CPTAC-3997
Peptide Molecular Mass
1,098.6033
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>80%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b4 (1+) 16.4 4.7 4.5 12.6 4.3 6.2 20.7 6.4 7.7 15 15 15
y8 (2+) 15.7 4.9 7.3 27.7 9.1 9.1 31.8 10.3 11.7 15 15 15
y4 (1+) 28.6 12.3 18 33.9 29.8 33.6 44.4 32.2 38.1 15 15 15
y6 (1+) 7.7 3.2 3.9 12 3.4 4.4 14.3 4.7 5.9 15 15 15
y8 (1+) 17.2 4.1 3.9 16.4 6.5 4.2 23.8 7.7 5.7 15 15 15
sum 6.5 3.6 4.4 10.8 10.1 10 12.6 10.7 10.9 15 15 15


Additional Resources and Comments