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Overview Data source: UniProt

Official Gene Symbol Other Aliases
Sdc1 Synd-1, Synd1
Sequence Length (AA) Molecular Weight (Da)
311 32905
Protein Name
Syndecan-1
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MRRAALWLWL CALALRLQPA LPQIVAVNVP PEDQDGSGDD SDNFSGSGTG
60 70 80 90 100
ALPDTLSRQT PSTWKDVWLL TATPTAPEPT SSNTETAFTS VLPAGEKPEE
110 120 130 140 150
GEPVLHVEAE PGFTARDKEK EVTTRPRETV QLPITQRAST VRVTTAQAAV
160 170 180 190 200
TSHPHGGMQP GLHETSAPTA PGQPDHQPPR VEGGGTSVIK EVVEDGTANQ
210 220 230 240 250
LPAGEGSGEQ DFTFETSGEN TAVAAVEPGL RNQPPVDEGA TGASQSLLDR
260 270 280 290 300
KEVLGGVIAG GLVGLIFAVC LVAFMLYRMK KKDEGSYSLE EPKQANGGAY
310 311
QKPTKQEEFY A

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-4060 Collapse assay details

Data source: Panorama

Official Gene Symbol
Sdc1
Peptide Sequence
VEGGGTSVIK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
181
Peptide End
190
CPTAC ID
non-CPTAC-4060
Peptide Molecular Mass
945.5131
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>80%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (1+) 9.2 4.4 6.8 11.7 5.6 7.7 14.9 7.1 10.3 15 15 15
y8 (1+) 7.6 4.2 6.5 11.9 9.3 7.7 14.1 10.2 10.1 15 15 15
y2 (1+) 23.5 6.5 5.6 24.3 6.3 5.4 33.8 9.1 7.8 15 15 15
b2 (1+) 6.7 3.6 3.2 10.9 6.9 3.6 12.8 7.8 4.8 15 15 15
b5 (2+) 106 34.4 20.9 121.7 39 26.4 161.4 52 33.7 15 15 15
sum 4.3 2.7 2.8 9.4 7.1 4.5 10.3 7.6 5.3 15 15 15


Additional Resources and Comments