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Overview Data source: UniProt

Official Gene Symbol Other Aliases
Fga N/A
Sequence Length (AA) Molecular Weight (Da)
789 87429
Protein Name
Fibrinogen alpha chain
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MLSLRVTCLI LSVASTVWTT DTEDKGEFLS EGGGVRGPRV VERHQSQCKD
60 70 80 90 100
SDWPFCSDDD WNHKCPSGCR MKGLIDEANQ DFTNRINKLK NSLFDFQRNN
110 120 130 140 150
KDSNSLTRNI MEYLRGDFAN ANNFDNTYGQ VSEDLRRRIE ILRRKVIEKA
160 170 180 190 200
QQIQALQSNV RAQLIDMKRL EVDIDIKIRS CKGSCSRAVN REINLQDYEG
210 220 230 240 250
HQKQLQQVIA KELLPTKDRQ YLPALKMSPV PDLVPGSFKS QLQEAPPEWK
260 270 280 290 300
ALTEMRQMRM ELERPGKDGG SRGDSPGDSR GDSRGDFATR GPGSKAENPT
310 320 330 340 350
NPGPGGSGYW RPGNSGSGSD GNRNPGTTGS DGTGDWGTGS PRPGSDSGNF
360 370 380 390 400
RPANPNWGVF SEFGDSSSPA TRKEYHTGKA VTSKGDKELL IGKEKVTSSG
410 420 430 440 450
TSTTHRSCSK TITKTVTGPD GRREVVKEVI TSDDGSDCGD ATELDISHSF
460 470 480 490 500
SGSLDELSER HPDLSGFFDN HFGLISPNFK EFGSKTHSDS DILTNIEDPS
510 520 530 540 550
SHVPEFSSSS KTSTVKKQVT KTYKMADEAG SEAHREGETR NTKRGRARAR
560 570 580 590 600
PTRDCDDVLQ TQTSGAQNGI FSIKPPGSSK VFSVYCDQET SLGGWLLIQQ
610 620 630 640 650
RMDGSLNFNR TWQDYKRGFG SLNDKGEGEF WLGNDYLHLL TLRGSVLRVE
660 670 680 690 700
LEDWAGKEAY AEYHFRVGSE AEGYALQVSS YRGTAGDALV QGSVEEGTEY
710 720 730 740 750
TSHSNMQFST FDRDADQWEE NCAEVYGGGW WYNSCQAANL NGIYYPGGTY
760 770 780 789
DPRNNSPYEI ENGVVWVPFR GADYSLRAVR MKIRPLVGQ

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for non-CPTAC-3709 Collapse assay details

Data source: Panorama

Official Gene Symbol
Fga
Peptide Sequence
EINLQDYEGHQK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
192
Peptide End
203
CPTAC ID
non-CPTAC-3709
Peptide Molecular Mass
1,472.6896
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y10 (3+) 14.9 4.9 2.3 16 6.8 7.9 21.9 8.4 8.2 15 15 15
y7 (2+) NA NA NA NA NA NA NA NA NA 0 0 0
y8 (2+) 9.8 5.2 5.2 13.3 6 8.3 16.5 7.9 9.8 15 15 15
y9 (2+) 9 3.3 4.1 13.1 3.9 9.2 15.9 5.1 10.1 15 15 15
y10 (2+) 7.9 5.7 5.3 16 13.5 16.8 17.8 14.7 17.6 15 15 15
b7 (2+) NA NA NA NA NA NA NA NA NA 0 0 0
sum 5.9 3.2 2.9 12.1 7.8 10.7 13.5 8.4 11.1 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-1117 Collapse assay details

Data source: Panorama

Official Gene Symbol
FGA
Peptide Sequence
ESSSHHPGIAEFPSR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
559
Peptide End
573
CPTAC ID
non-CPTAC-1117
Peptide Molecular Mass
1,636.7594
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y8 (2+) NA NA NA NA NA NA NA NA NA 0 0 0
y9 (2+) 9.6 6.4 8 12 8.6 8.5 15.4 10.7 11.7 15 15 15
y13 (2+) 9.2 3.3 10 8.4 8.7 12.5 12.5 9.3 16 15 15 15
y3 (1+) 14.1 5.1 6.4 14.9 9.4 6 20.5 10.7 8.8 15 15 15
y4 (1+) 11.2 7.7 6.4 8.8 9.6 7.1 14.2 12.3 9.6 15 15 15
sum 6.1 4 3.3 7.2 5.6 4.1 9.4 6.9 5.3 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-1118 Collapse assay details

Data source: Panorama

Official Gene Symbol
FGA
Peptide Sequence
GSESGIFTNTK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
548
Peptide End
558
CPTAC ID
non-CPTAC-1118
Peptide Molecular Mass
1,139.5459
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y2 (1+) 9.7 3.7 4.9 12.7 6.7 5 16 7.7 7 15 15 15
y4 (1+) 10.6 4.7 4.1 15 6.3 4.2 18.4 7.9 5.9 15 15 15
y5 (1+) 10.1 4.4 4.7 9.7 9.1 4.7 14 10.1 6.6 15 15 15
y7 (1+) 7.4 2.8 5.4 11.4 6.1 5.4 13.6 6.7 7.6 15 15 15
y8 (1+) 10.8 5.7 4.5 13.3 7.2 6.3 17.1 9.2 7.7 15 15 15
sum 4.4 1.2 2.1 8.2 6.1 2.9 9.3 6.2 3.6 15 15 15

Additional Resources and Comments