Overview Data source: UniProt

Official Gene Symbol Other Aliases
C9 N/A
Sequence Length (AA) Molecular Weight (Da)
559 63173
Protein Name
Complement component C9
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MSACRSFAVA ICILEISILT AQYTTSYDPE LTESSGSASH IDCRMSPWSE
60 70 80 90 100
WSQCDPCLRQ MFRSRSIEVF GQFNGKRCTD AVGDRRQCVP TEPCEDAEDD
110 120 130 140 150
CGNDFQCSTG RCIKMRLRCN GDNDCGDFSD EDDCESEPRP PCRDRVVEES
160 170 180 190 200
ELARTAGYGI NILGMDPLST PFDNEFYNGL CNRDRDGNTL TYYRRPWNVA
210 220 230 240 250
SLIYETKGEK NFRTEHYEEQ IEAFKSIIQE KTSNFNAAIS LKFTPTETNK
260 270 280 290 300
AEQCCEETAS SISLHGKGSF RFSYSKNETY QLFLSYSSKK EKMFLHVKGE
310 320 330 340 350
IHLGRFVMRN RDVVLTTTFV DDIKALPTTY EKGEYFAFLE TYGTHYSSSG
360 370 380 390 400
SLGGLYELIY VLDKASMKRK GVELKDIKRC LGYHLDVSLA FSEISVGAEF
410 420 430 440 450
NKDDCVKRGE GRAVNITSEN LIDDVVSLIR GGTRKYAFEL KEKLLRGTVI
460 470 480 490 500
DVTDFVNWAS SINDAPVLIS QKLSPIYNLV PVKMKNAHLK KQNLERAIED
510 520 530 540 550
YINEFSVRKC HTCQNGGTVI LMDGKCLCAC PFKFEGIACE ISKQKISEGL
559
PALEFPNEK

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Assay Details for non-CPTAC-1111 Collapse assay details

Data source: Panorama

Official Gene Symbol
C9
Peptide Sequence
LSPIYNLVPVK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
473
Peptide End
483
CPTAC ID
non-CPTAC-1111
Peptide Molecular Mass
1,241.7384
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b2 (1+) 5.2 5.9 6.1 7 5.8 5.7 8.7 8.3 8.3 7 15 15
y9 (2+) 2.7 4.2 3.5 8.8 4.9 3.3 9.2 6.5 4.8 15 15 15
y3 (1+) 6.3 5.4 2.9 11.2 6.4 3.2 12.9 8.4 4.3 15 15 15
y7 (1+) 6.1 5.2 6.2 10.2 5.4 7.8 11.9 7.5 10 15 15 15
y9 (1+) 6.3 4.4 5.3 12 4.7 4.9 13.6 6.4 7.2 15 15 15
sum 2.8 3.5 2.6 8.9 4.3 2.9 9.3 5.5 3.9 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-2656 Collapse assay details

Data source: Panorama

Official Gene Symbol
C9
Peptide Sequence
TSNFNAAISLK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
232
Peptide End
242
CPTAC ID
non-CPTAC-2656
Peptide Molecular Mass
1,164.6139
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y3 (1+) 5.7 8.3 5.8 15.7 9.1 6.2 16.7 12.3 8.5 15 15 15
y9 (2+) 11.2 6.9 7.5 15.9 8.6 9.7 19.4 11 12.3 15 15 15
b3 (1+) 24 9.9 7.7 20.1 11.2 8.1 31.3 14.9 11.2 15 15 15
y7 (1+) 8.7 6.6 5.3 9.4 9.9 5.5 12.8 11.9 7.6 15 15 15
y5 (1+) 15.7 6.2 9.8 15.1 6.8 12 21.8 9.2 15.5 15 15 15
sum 4.8 3.6 4.3 9.9 6.6 4.9 11 7.5 6.5 15 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-1110 Collapse assay details

Data source: Panorama

Official Gene Symbol
C9
Peptide Sequence
VVEESELAR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
146
Peptide End
154
CPTAC ID
non-CPTAC-1110
Peptide Molecular Mass
1,030.5295
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
6490 Triple Quad (Agilent)
Internal Standard
synthetic peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b3 (1+) 18.3 14 6.6 23.9 12.1 9.4 30.1 18.5 11.5 13 15 15
y3 (1+) 21.6 9.8 13.3 14.7 8.8 11 26.1 13.2 17.3 8 15 15
y5 (1+) 28.4 6 5.4 38.3 9 7.5 47.7 10.8 9.2 8 15 15
y6 (1+) 8.2 13.2 8.3 12 12 9 14.5 17.8 12.2 11 15 15
y7 (1+) 10.8 7.3 8.7 11.6 9.6 9.3 15.8 12.1 12.7 15 15 15
sum 11.4 5.9 6 12.5 8.4 6.2 16.9 10.3 8.6 15 15 15

Additional Resources and Comments