Show Nav →

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Psme2 Pa28b1
Sequence Length (AA) Molecular Weight (Da)
239 27057
Protein Name
Proteasome activator complex subunit 2
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MAKPCGVRLS GEARKQVDVF RQNLFQEADD FLCTFLPRKI ISLSQLLQED
60 70 80 90 100
SLNVADLSSL RAPLDIPIPD PPPKDDEMET DKQEKKEVPK CGYLPGNEKL
110 120 130 140 150
LALLALVKPE VWTLKEKCIL VITWIQHLIP KIEDGNDFGV AIQEKVLERV
160 170 180 190 200
NAVKTKVEAF QTTISKYFSE RGDAVAKASK DTHVMDYRAL VHERDEAAYG
210 220 230 239
ALRAMVLDLR AFYAELYHII SSNLEKIVNP KGEEKPSMY

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

Click a point on a node
to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

loading

Loader

Assay Details for CPTAC-263 Collapse assay details

Data source: Panorama

Official Gene Symbol
PSME2
Peptide Sequence
IEDGNDFGVAIQEK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
132
Peptide End
145
CPTAC ID
CPTAC-263
Peptide Molecular Mass
1,533.7311
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (1+) 25.6 16.7 6.1 37.9 19.8 11.4 45.7 25.9 12.9 15 25 15
y8 (1+) 16.4 10 8.9 21.9 13.6 13.3 27.4 16.9 16 15 25 15
y5 (1+) 19 8.9 6.6 18 16.5 12.8 26.2 18.7 14.4 15 25 15
sum 13.2 8.5 5.5 14.9 15.5 11.6 19.9 17.7 12.8 15 25 15

Additional Resources and Comments


Assay Details for CPTAC-262 Collapse assay details

Data source: Panorama

Official Gene Symbol
PSME2
Peptide Sequence
VLSLLALVKPEVWTLK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
100
Peptide End
115
CPTAC ID
CPTAC-262
Peptide Molecular Mass
1,808.1175
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
cell line lysate pool
Submitting Laboratory
Fred Hutchinson Cancer Research Center
Submitting Lab PI
Amanda Paulovich

Publication

View Details (opens in a new window)

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins. Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG. Nat Methods. 2014 Feb;11(2):149-55. doi: 10.1038/nmeth.2763. Epub 2013 Dec 8. PMID: 24317253


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
5500 QTRAP (ABSCIEX)
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C,15N
LC
nanoLC-Ultra 2D, cHiPLC-nanoflex (Eksigent)
Column Packing
ChromXP C18-CL, 3 um, 120A
Column Dimensions
150 x 0.075 mm
Flow Rate
500 nL / min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y11 (2+) 15.7 12.9 14 26.4 36.7 25 30.7 38.9 28.7 25 15 15
y12 (2+) 18.2 11 14.6 26.1 34.7 25.4 31.8 36.4 29.3 25 15 15
y14 (2+) 24.7 17.6 14.6 37.7 26.7 34.4 45.1 32 37.4 25 15 15
sum 21.2 14.8 13.1 33.1 28.4 28.5 39.3 32 31.4 25 15 15

Additional Resources and Comments


Assay Details for non-CPTAC-3942 Collapse assay details

Data source: Panorama

Official Gene Symbol
Psme2
Peptide Sequence
DEAAYGALR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
195
Peptide End
203
CPTAC ID
non-CPTAC-3942
Peptide Molecular Mass
964.4614
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Publication

View Details (opens in a new window)

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays. Michaud SA, Sinclair NJ, Petrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y Eshghi A1, Richard VR, Sickmann A, Borchers CH. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018.


Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>80%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
b3 (1+) 9.2 7.1 5 13.6 9.9 7.5 16.4 12.2 9 15 15 15
b2 (1+) 6.2 3 3.9 8.4 6 7.1 10.4 6.7 8.1 15 15 15
y5 (1+) 11.6 2.2 4.7 10 4.1 6.9 15.3 4.7 8.3 15 15 15
y6 (1+) 9.4 5.6 2.9 11 10.1 5.1 14.5 11.5 5.9 15 15 15
y7 (1+) 10.2 5.9 4.9 10.6 7.3 7.8 14.7 9.4 9.2 15 15 15
sum 4.6 2 2 6.2 5.5 5.2 7.7 5.9 5.6 15 15 15

Additional Resources and Comments