Show Nav →

Overview Data source: UniProt

Official Gene Symbol Other Aliases
Cd48 Bcm-1
Sequence Length (AA) Molecular Weight (Da)
240 27383
Protein Name
CD48 antigen
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MCFIKQGWCL VLELLLLPLG TGFQGHSIPD INATTGSNVT LKIHKDPLGP
60 70 80 90 100
YKRITWLHTK NQKILEYNYN STKTIFESEF KGRVYLEENN GALHISNVRK
110 120 130 140 150
EDKGTYYMRV LRETENELKI TLEVFDPVPK PSIEINKTEA STDSCHLRLS
160 170 180 190 200
CEVKDQHVDY TWYESSGPFP KKSPGYVLDL IVTPQNKSTF YTCQVSNPVS
210 220 230 240
SKNDTVYFTL PCDLARSSGV CWTATWLVVT TLIIHRILLT

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

Click a point on a node
to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

loading

Loader

Assay Details for CPTAC-1199 Collapse assay details

Data source: Panorama

Official Gene Symbol
CD48
Peptide Sequence
LQVLDPVPKPVIK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
125
Peptide End
137
CPTAC ID
CPTAC-1199
Peptide Molecular Mass
1,444.9017
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
Ovarian cancer tumor tissue lysate
Submitting Laboratory
Pacific Northwest National Laboratory
Submitting Lab PI
Tao Liu

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
Waters nanoACQUITY (Part Number 176016000)
Column Packing
Waters BEH C18, 1.7 um 130 Å (Part Number 186007485)
Column Dimensions
100 um x 100 mm
Flow Rate
0.5 uL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y4 (1+) 35.3 8.8 15.9 33 15.2 17.7 48.3 17.6 23.8 15 15 15
y6 (1+) 36.6 14.8 12.5 35 21.4 15.2 50.6 26 19.7 15 15 15
y8 (1+) 25 8.8 9 27.2 9.1 9.7 36.9 12.7 13.2 15 15 15
sum 12.8 4.5 7.9 21.5 5.5 8.6 25 7.1 11.7 15 15 15


Additional Resources and Comments


Assay Details for non-CPTAC-4020 Collapse assay details

Data source: Panorama

Official Gene Symbol
Cd48
Peptide Sequence
DPLGPYK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
46
Peptide End
52
CPTAC ID
non-CPTAC-4020
Peptide Molecular Mass
788.4069
Species
Mus musculus (Mouse)
Assay Type
Direct MRM
Matrix
Plasma
Submitting Laboratory
UVic-Genome BC Proteomics Centre
Submitting Lab PI
Christoph Borchers

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
Agilent 6490/6495 QQQ
Internal Standard
synthetic peptide
Peptide Standard Purity
>80%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
1290 LC (Agilent)
Column Packing
Zorbax Eclipse Plus C18, 1.8 µm
Column Dimensions
2.1 x 150 mm
Flow Rate
400 µL/min

Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (1+) 8.3 4.4 2.5 12.6 5.4 3.9 15.1 7 4.6 15 15 15
y4 (1+) 12 5.1 2.3 15.6 6.4 2.8 19.7 8.2 3.6 15 15 15
y3 (1+) 36.4 15.3 3.6 35.1 14.9 5.4 50.6 21.4 6.5 15 15 15
y6 (2+) 19.4 3.7 3.2 20.3 7.2 3.6 28.1 8.1 4.8 15 15 15
b2 (1+) 23.9 5.8 3.9 23.9 7.1 3.4 33.8 9.2 5.2 15 15 15
sum 6.8 1.8 1.1 9.2 5 2.5 11.4 5.3 2.7 15 15 15


Additional Resources and Comments