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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
OLFM4 GW112
Sequence Length (AA) Molecular Weight (Da)
510 57280
Protein Name
Olfactomedin-4
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MRPGLSFLLA LLFFLGQAAG DLGDVGPPIP SPGFSSFPGV DSSSSFSSSS
60 70 80 90 100
RSGSSSSRSL GSGGSVSQLF SNFTGSVDDR GTCQCSVSLP DTTFPVDRVE
110 120 130 140 150
RLEFTAHVLS QKFEKELSKV REYVQLISVY EKKLLNLTVR IDIMEKDTIS
160 170 180 190 200
YTELDFELIK VEVKEMEKLV IQLKESFGGS SEIVDQLEVE IRNMTLLVEK
210 220 230 240 250
LETLDKNNVL AIRREIVALK TKLKECEASK DQNTPVVHPP PTPGSCGHGG
260 270 280 290 300
VVNISKPSVV QLNWRGFSYL YGAWGRDYSP QHPNKGLYWV APLNTDGRLL
310 320 330 340 350
EYYRLYNTLD DLLLYINARE LRITYGQGSG TAVYNNNMYV NMYNTGNIAR
360 370 380 390 400
VNLTTNTIAV TQTLPNAAYN NRFSYANVAW QDIDFAVDEN GLWVIYSTEA
410 420 430 440 450
STGNMVISKL NDTTLQVLNT WYTKQYKPSA SNAFMVCGVL YATRTMNTRT
460 470 480 490 500
EEIFYYYDTN TGKEGKLDIV MHKMQEKVQS INYNPFDQKL YVYNDGYLLN
510
YDLSVLQKPQ

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-1529 Collapse assay details

Data source: Panorama

Official Gene Symbol
OLFM4
Peptide Sequence
LYVYNDGYLLNYDLSVLQKPQ
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
490
Peptide End
510
CPTAC ID
CPTAC-1529
Peptide Molecular Mass
2,517.2791
Species
Homo sapiens (Human)
Assay Type
Direct MRM or SRM
Matrix
Ovarian cancer tumor tissue lysate
Submitting Laboratory
Pacific Northwest National Laboratory
Submitting Lab PI
Tao Liu

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N P
LC
Waters nanoACQUITY (Part Number 176016000)
Column Packing
Waters BEH C18, 1.7 um 130 Å (Part Number 186007485)
Column Dimensions
100 um x 100 mm
Flow Rate
0.4 uL/min

Assay Multiplexing Expand assay panel

Pacific Northwest National Laboratory-DirectSRM1


Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y3 (1+) 22.6 20.2 31.6 51.2 50.4 57 56 54.3 65.2 15 15 15
y4 (1+) 18.4 42.5 40.5 46 65.2 61.4 49.5 77.8 73.6 15 15 15
y5 (1+) 15.5 41.6 39.9 62.6 58.1 64.6 64.5 71.5 75.9 15 15 15
sum 14.5 19.2 33.3 51.8 52.3 57.7 53.8 55.7 66.6 15 15 15


Additional Resources and Comments


Assay Details for CPTAC-1528 Collapse assay details

Data source: Panorama

Official Gene Symbol
OLFM4
Peptide Sequence
VQSINYNPFDQK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
478
Peptide End
489
CPTAC ID
CPTAC-1528
Peptide Molecular Mass
1,451.7045
Species
Homo sapiens (Human)
Assay Type
Direct MRM or SRM
Matrix
Ovarian cancer tumor tissue lysate
Submitting Laboratory
Pacific Northwest National Laboratory
Submitting Lab PI
Tao Liu

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
Waters nanoACQUITY (Part Number 176016000)
Column Packing
Waters BEH C18, 1.7 um 130 Å (Part Number 186007485)
Column Dimensions
100 um x 100 mm
Flow Rate
0.4 uL/min

Assay Multiplexing Expand assay panel

Pacific Northwest National Laboratory-DirectSRM1


Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (1+) 14.3 8.6 5.1 39 19.3 19.7 41.5 21.1 20.3 15 15 15
y6 (1+) 11.2 7.3 5.4 39 21.4 19.9 40.6 22.6 20.6 15 15 15
y8 (1+) 5.8 10.7 8.4 32.7 24.7 21.4 33.2 26.9 23 15 15 15
y10 (1+) 7.1 6.3 3.6 35.1 20 18.8 35.8 21 19.1 15 15 15
sum 4.2 6.6 2.5 35.6 20.5 19.1 35.8 21.5 19.3 15 15 15


Additional Resources and Comments