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Overview Data source: UniProt

Official Gene Symbol Other Aliases
AP1S2 N/A
Sequence Length (AA) Molecular Weight (Da)
157 18615
Protein Name
AP-1 complex subunit sigma-2
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MQFMLLFSRQ GKLRLQKWYV PLSDKEKKKI TRELVQTVLA RKPKMCSFLE
60 70 80 90 100
WRDLKIVYKR YASLYFCCAI EDQDNELITL EIIHRYVELL DKYFGSVCEL
110 120 130 140 150
DIIFNFEKAY FILDEFLLGG EVQETSKKNV LKAIEQADLL QEEAETPRSV
157
LEEIGLT

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-1535 Collapse assay details

Data source: Panorama

Official Gene Symbol
AP1S2
Peptide Sequence
ELVQTVLAR
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
33
Peptide End
41
CPTAC ID
CPTAC-1535
Peptide Molecular Mass
1,027.6026
Species
Homo sapiens (Human)
Assay Type
Direct MRM or SRM
Matrix
Ovarian cancer tumor tissue lysate
Submitting Laboratory
Pacific Northwest National Laboratory
Submitting Lab PI
Tao Liu

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
Waters nanoACQUITY (Part Number 176016000)
Column Packing
Waters BEH C18, 1.7 um 130 Å (Part Number 186007485)
Column Dimensions
100 um x 100 mm
Flow Rate
0.4 uL/min

Assay Multiplexing Expand assay panel

Pacific Northwest National Laboratory-DirectSRM1


Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y5 (1+) 9.4 6 2.9 44 35.1 32.6 45 35.6 32.7 15 15 15
y6 (1+) 4.7 7.1 2.7 43 33.9 32.4 43.3 34.6 32.5 15 15 15
y7 (1+) 10.9 6.2 2.3 40.5 31.9 30.7 41.9 32.5 30.8 15 15 15
sum 4.5 5.9 1.7 42.6 33.9 32 42.8 34.4 32 15 15 15

Additional Resources and Comments


Assay Details for CPTAC-1534 Collapse assay details

Data source: Panorama

Official Gene Symbol
AP1S2
Peptide Sequence
WYVPLSDK
Modification Type
unmodified
Protein - Site of Modification
N/A
Peptide - Site of Modification
N/A
Peptide Start
18
Peptide End
25
CPTAC ID
CPTAC-1534
Peptide Molecular Mass
1,006.5124
Species
Homo sapiens (Human)
Assay Type
Direct MRM or SRM
Matrix
Ovarian cancer tumor tissue lysate
Submitting Laboratory
Pacific Northwest National Laboratory
Submitting Lab PI
Tao Liu

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
peptide
Peptide Standard Purity
>95%
Peptide Standard Label Type
13C and 15N at C-terminus K
LC
Waters nanoACQUITY (Part Number 176016000)
Column Packing
Waters BEH C18, 1.7 um 130 Å (Part Number 186007485)
Column Dimensions
100 um x 100 mm
Flow Rate
0.4 uL/min

Assay Multiplexing Expand assay panel

Pacific Northwest National Laboratory-DirectSRM1


Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

Loader

Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y3 (1+) 10.9 12 9.1 43.6 40.6 40.6 44.9 42.3 41.6 15 15 15
y5 (1+) 10.6 9.1 5.6 47.7 41 38 48.9 42 38.4 15 15 15
y6 (1+) 9.5 10.9 6.9 43 43.4 38.8 44 44.7 39.4 15 15 15
sum 7.3 8 2.9 44.8 41 37.9 45.4 41.8 38 15 15 15

Additional Resources and Comments