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Please include the following statement when referencing the CPTAC Assay Portal
We would like to acknowledge the National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) Assay Portal (assays.cancer.gov) for developing assays and establishing criteria for the assays described in this publication.

Overview Data source: UniProt

Official Gene Symbol Other Aliases
DPP7 DPP2, QPP
Sequence Length (AA) Molecular Weight (Da)
492 54341
Protein Name
Dipeptidyl peptidase 2
Sources
UniProt
PhosphoSitePlus ®
GeneCards
Human Protein Atlas

Protein Sequence hover to view complete sequence

10 20 30 40 50
MGSAPWAPVL LLALGLRGLQ AGARRAPDPG FQERFFQQRL DHFNFERFGN
60 70 80 90 100
KTFPQRFLVS DRFWVRGEGP IFFYTGNEGD VWAFANNSAF VAELAAERGA
110 120 130 140 150
LLVFAEHRYY GKSLPFGAQS TQRGHTELLT VEQALADFAE LLRALRRDLG
160 170 180 190 200
AQDAPAIAFG GSYGGMLSAY LRMKYPHLVA GALAASAPVL AVAGLGDSNQ
210 220 230 240 250
FFRDVTADFE GQSPKCTQGV REAFRQIKDL FLQGAYDTVR WEFGTCQPLS
260 270 280 290 300
DEKDLTQLFM FARNAFTVLA MMDYPYPTDF LGPLPANPVK VGCDRLLSEA
310 320 330 340 350
QRITGLRALA GLVYNASGSE HCYDIYRLYH SCADPTGCGT GPDARAWDYQ
360 370 380 390 400
ACTEINLTFA SNNVTDMFPD LPFTDELRQR YCLDTWGVWP RPDWLLTSFW
410 420 430 440 450
GGDLRAASNI IFSNGNLDPW AGGGIRRNLS ASVIAVTIQG GAHHLDLRAS
460 470 480 490 492
HPEDPASVVE ARKLEATIIG EWVKAARREQ QPALRGGPRL SL

Data source: UniProt


Position of Targeted Peptide Analytes Relative to SNPs, Isoforms, and PTMs

Uniprot Database Entry PhosphoSitePlus ®

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to view detailed assay information below
All other points link out to UniProt



Phosphorylation Acetylation Ubiquitylation Other

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Assay Details for CPTAC-1304 Collapse assay details

Data source: Panorama

Official Gene Symbol
DPP7
Peptide Modified Sequence
N[+1.0]LSASVIAVTIQGGAHHLDLR
Modification Type
Deamidated (N)
Protein - Site of Modification
428
Peptide - Site of Modification
1
Peptide Start
428
Peptide End
448
CPTAC ID
CPTAC-1304
Peptide Molecular Mass
2,172.1651
Species
Homo sapiens (Human)
Assay Type
Direct MRM
Matrix
Human ovarian tumor tissue digest
Submitting Laboratory
Johns Hopkins University
Submitting Lab PI
Daniel Chan, Hui Zhang, Zhen Zhang

Assay Parameters Collapse assay parameters

Data source: Panorama

Instrument
TSQ Vantage
Internal Standard
Stable isotope-labeled peptides
Peptide Standard Purity
Crude (~60%)
Peptide Standard Label Type
13C and 15N at C-terminus R
LC
Accela 1250 Quaternary Low Pump
Column Packing
C18, 3 µm, 300 Å
Column Dimensions
1.0 mm I.D. x 15 cm
Flow Rate
50 µL/min

Assay Multiplexing Expand assay panel

Johns Hopkins University-D


Chromatograms

Data source: Panorama


Response Curves

Data source: Panorama

Retrieving Data

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Repeatability

Data source: Panorama

  Average intra-assay CV
(within day CV)
Average inter-assay CV
(between day CV)
Total CV
equation
n=
Fragment ion / Transition Low Med High Low Med High Low Med High Low Med High
y9 (1+) 44 17.7 15.1 50.6 28.4 15.8 67.1 33.5 21.9 15 15 15
y14 (2+) 54.8 12.8 19.7 51.7 13.3 20.2 75.3 18.5 28.2 15 15 15
y12 (2+) 75.8 17.9 26.9 78.2 19.8 25.9 108.9 26.7 37.3 15 15 15
sum 33.5 8.5 11.8 31.2 9 10.9 45.8 12.4 16.1 15 15 15


Additional Resources and Comments